# $Id: Portfile 33351 2008-01-24 13:51:27Z ryandesign@macports.org $
PortSystem 1.0
name		ncbi_tools
version         20070826
description	blast is a set of tools for doing nucleotide and protein searches
maintainers	michael.thon@yahoo.com
categories	science
platforms	darwin 
homepage	http://www.ncbi.nlm.nih.gov/blast/
fetch.use_epsv	no
master_sites	ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/
distfiles       ncbi.tar.gz
checksums       md5 c17f7b08c12823e4320661894110dcb1
dist_subdir     ${name}/${version}
worksrcdir      
use_configure   no
build.cmd       './ncbi/make/makedis.csh'
build.target
set binaries    "Psequin          blastclust       findspl          psiblast.REAL \
asn2ff           blastpgp         formatdb         psiblast_cs.REAL \
asn2gb           cdscan           formatrpsdb      rpsblast \
asn2idx          checksub         gene2xml         sbtedit \
asn2xml          copymat          getmesh          seedtop \
asndhuff         ddv              getpub           seqtest \
asntool          debruijn         gil2bin          tbl2asn \
bl2bag.cgi       demo_regexp      idfetch          test_regexp \
bl2seq           demo_regexp_grep impala           testcore \
blast            dosimple         indexpub         testobj \
blast.REAL       entrcmd          makemat          testval \
blast_cs.REAL    entrez2          makeset          udv \
blastall         errhdr           megablast        vecscreen \
blastall_old     fa2htgs          ncbisort         wblast2.REAL \
blastcl3         fastacmd         nph-viewgif.cgi  wblast2_cs.REAL"

set manpages    " Nentrez.1       blastall_old.1  findspl.1       makeset.1 \
Psequin.1       blastcl3.1      fmerge.1        megablast.1 \
asn2all.1       blastclust.1    formatdb.1      netentcf.1 \
asn2asn.1       blastpgp.1      formatrpsdb.1   nps2gps.1 \
asn2ff.1        cdscan.1        gbseqget.1      rpsblast.1 \
asn2fsa.1       checksub.1      gene2xml.1      sbtedit.1 \
asn2gb.1        cleanasn.1      getfeat.1       seedtop.1 \
asn2idx.1       copymat.1       getmesh.1       sortbyquote.1 \
asn2xml.1       ddv.1           getpub.1        spidey.1 \
asndhuff.1      debruijn.1      gil2bin.1       tbl2asn.1 \
asntool.1       entrcmd.1       idfetch.1       trna2sap.1 \
asnval.1        entrez2.1       impala.1        trna2tbl.1 \
bl2seq.1        errhdr.1        indexpub.1      udv.1 \
blast.1         fa2htgs.1       insdseqget.1    vecscreen.1 \
blastall.1      fastacmd.1      makemat.1"


destroot {
	xinstall -d 755 ${destroot}${prefix}/share/doc/${name}
	file copy ${worksrcpath}/ncbi/doc ${destroot}${prefix}/share/doc/${name}
	foreach binary ${binaries} {
		xinstall -m 755 ${worksrcpath}/ncbi/bin/${binary} ${destroot}${prefix}/bin/ 
	}
	foreach manpage ${manpages} {
		xinstall -m 444 ${worksrcpath}/ncbi/doc/man/${manpage} ${destroot}${prefix}/share/man/man1/ 
	}
}

long_description	${description}
livecheck.check		moddate